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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14164 and 14165 are separated by 1613 nucleotides
14165 and 14166 are separated by 256 nucleotides
14166 and 14167 are separated by 216 nucleotides
14167 and 14168 are separated by 334 nucleotides
mRNA_5796: 14164 - BLAST Protein of unknown function DUF4598 [Xanthophyllomyce..., at 959,375 to 960,569
14164
mRNA_5797: 14165 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 962,183 to 965,371
14165
mRNA_5798: 14166 - KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein, at 965,628 to 966,973
14166
mRNA_5799: 14167 - K09540 SEC63, DNAJC23 translocation protein SEC63, at 967,190 to 969,688
14167
mRNA_5800: 14168 - K11801 WDR23 WD repeat-containing protein 23, at 970,023 to 972,593
14168
Group
Condition
mRNA
_5796
mRNA
_5797
mRNA
_5798
mRNA
_5799
mRNA
_5800
14164
14165
14166
14167
14168
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
-0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
-0.2
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.5
-0.1
N.D.
-0.2
growth on ypd
YPD
+0.2
-0.4
-0.0
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose
+0.2
-0.1
+0.1
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.2
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-0.1
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.0
-0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.8
-0.2
N.D.
-0.2
auxotrophy
Dropout Complete
-0.1
-0.1
+0.5
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.6
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.5
+0.4
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.9
-0.0
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
+0.4
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.4
+0.3
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.1
+0.3
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.4
+0.5
N.D.
-0.1
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