Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
14165 and 14166 are separated by 256 nucleotides
14166 and 14167 are separated by 216 nucleotides
14167 and 14168 are separated by 334 nucleotides
14168 and 14169 are separated by 265 nucleotides
mRNA_5797: 14165 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 962,183 to 965,371
14165
mRNA_5798: 14166 - KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein, at 965,628 to 966,973
14166
mRNA_5799: 14167 - K09540 SEC63, DNAJC23 translocation protein SEC63, at 967,190 to 969,688
14167
mRNA_5800: 14168 - K11801 WDR23 WD repeat-containing protein 23, at 970,023 to 972,593
14168
mRNA_5801: 14169 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 972,859 to 974,663
14169
Group
Condition
mRNA
_5797
mRNA
_5798
mRNA
_5799
mRNA
_5800
mRNA
_5801
14165
14166
14167
14168
14169
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.1
N.D.
-0.2
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
N.D.
-0.2
-0.1
growth on ypd
YPD
-0.4
-0.0
N.D.
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
N.D.
+0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose
-0.1
+0.1
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
N.D.
+0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
N.D.
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
-0.2
N.D.
-0.2
-0.0
growth on oleic acid
YNB Glucose
+0.2
-0.1
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
N.D.
+0.0
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.6
N.D.
+0.1
-0.1
auxotrophy
Dropout Complete
-0.1
+0.5
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.4
N.D.
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
-0.0
N.D.
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.3
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.4
N.D.
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.5
N.D.
-0.1
-0.0
remove
mRNA_5797
plot
remove
mRNA_5798
plot
remove
mRNA_5799
remove
mRNA_5800
plot
remove
mRNA_5801
plot