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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14169 and 14170 are separated by 156 nucleotides
14170 and 14171 are separated by 326 nucleotides
14171 and 14172 are separated by 635 nucleotides
14172 and 14173 are separated by 192 nucleotides
mRNA_5801: 14169 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 972,859 to 974,663
14169
mRNA_5802: 14170 - K07441 ALG14 beta-1,4-N-acetylglucosaminyltransferase, at 974,820 to 975,968
14170
mRNA_5803: 14171 - Hypothetical Protein, at 976,295 to 977,367
14171
mRNA_5804: 14172 - Hypothetical Protein, at 978,003 to 978,815
14172
mRNA_5805: 14173 - HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324, at 979,008 to 980,217
14173
Group
Condition
mRNA
_5801
mRNA
_5802
mRNA
_5803
mRNA
_5804
mRNA
_5805
14169
14170
14171
14172
14173
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.6
-0.2
+0.3
-1.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.7
-0.4
-1.5
+0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.0
-0.3
-0.8
-0.8
growth on oleic acid
YNB Oleic Acid
-0.4
-0.4
-0.3
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
-0.1
+0.2
-0.7
growth on ypd
YPD
-0.1
-0.2
-0.1
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
-0.2
-0.3
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.5
-0.3
+0.6
+0.2
growth on oleic acid
YNB Glucose
+0.2
-0.2
-0.1
+0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
+0.3
-0.4
+1.1
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
+0.4
-0.5
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
-0.0
-0.1
+0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.2
-0.0
+0.6
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.4
+0.1
-0.8
+1.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.3
+0.2
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.6
-0.2
+0.5
+1.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.2
-0.2
+0.7
+1.1
auxotrophy
YNB Glucose
+0.1
-0.3
+0.1
+0.2
+1.5
auxotrophy
Dropout Complete
+0.1
-0.1
-0.2
+0.6
+1.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.5
+0.7
+0.8
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