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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14172 and 14173 are separated by 192 nucleotides
14173 and 14174 are separated by 751 nucleotides
14174 and 14175 are separated by 555 nucleotides
14175 and 14176 are separated by 207 nucleotides
mRNA_5804: 14172 - Hypothetical Protein, at 978,003 to 978,815
14172
mRNA_5805: 14173 - HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324, at 979,008 to 980,217
14173
mRNA_5806: 14174 - KOG4197 FOG PPR repeat, at 980,969 to 985,772
14174
mRNA_5807: 14175 - HMMPfam-Protein of unknown function (DUF2638)-PF10937, at 986,328 to 987,350
14175
mRNA_5808: 14176 - HMMPfam-Cytochrome oxidase complex assembly protein 1-PF08695, at 987,558 to 988,212
14176
Group
Condition
mRNA
_5804
mRNA
_5805
mRNA
_5806
mRNA
_5807
mRNA
_5808
14172
14173
14174
14175
14176
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-1.3
-0.3
-2.3
-1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
+1.2
+0.2
-1.5
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.3
-0.3
-1.8
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
-0.8
+0.1
+0.9
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.9
-0.1
+0.4
-2.0
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
+0.9
-0.7
+1.8
-1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.7
+0.3
+0.6
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.2
-0.2
-1.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.7
-0.2
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.7
+0.8
-0.3
-0.4
-0.3
growth on oleic acid
YNB Glucose
+0.3
+0.0
+0.3
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.5
+0.8
-0.3
+0.7
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.4
+0.3
+0.8
+0.6
growth on oleic acid
YNB Oleic Acid
+0.4
-0.3
+0.5
+1.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.4
+1.1
+0.2
+0.5
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.4
+0.9
+0.9
-0.2
growth on ypd
YPD
+0.0
+0.0
+0.7
+0.5
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+1.4
+0.2
+0.3
+1.0
auxotrophy
Dropout Complete
+0.6
+1.4
+0.1
+0.4
+1.1
auxotrophy
YNB Glucose 75mM Arginine
+0.7
+1.1
+0.4
+0.3
+1.3
auxotrophy
YNB Glucose
+0.2
+1.5
+0.1
+1.1
+1.0
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