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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14173 and 14174 are separated by 751 nucleotides
14174 and 14175 are separated by 555 nucleotides
14175 and 14176 are separated by 207 nucleotides
14176 and 14177 are separated by 116 nucleotides
mRNA_5805: 14173 - HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324, at 979,008 to 980,217
14173
mRNA_5806: 14174 - KOG4197 FOG PPR repeat, at 980,969 to 985,772
14174
mRNA_5807: 14175 - HMMPfam-Protein of unknown function (DUF2638)-PF10937, at 986,328 to 987,350
14175
mRNA_5808: 14176 - HMMPfam-Cytochrome oxidase complex assembly protein 1-PF08695, at 987,558 to 988,212
14176
mRNA_5809: 14177 - KOG2979 Protein involved in DNA repair, at 988,329 to 990,216
14177
Group
Condition
mRNA
_5805
mRNA
_5806
mRNA
_5807
mRNA
_5808
mRNA
_5809
14173
14174
14175
14176
14177
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-0.3
-2.3
-1.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.2
+0.2
-1.5
-1.4
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
-0.1
+0.4
-2.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.3
+0.6
-0.8
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
-1.0
+0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.3
-1.8
-0.0
+1.3
ypd buoyancy
40 hrs Low Buoyancy
+0.8
-0.3
-0.4
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.2
-0.1
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
+0.1
+0.9
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.5
+1.0
-0.3
-0.7
growth on oleic acid
YNB Glucose
+0.0
+0.3
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.3
+0.8
+0.6
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
-0.7
+1.8
-1.0
-0.0
growth on ypd
YPD
+0.0
+0.7
+0.5
+0.7
-0.7
growth on ricinoleic acid
YNB Glucose
+0.8
-0.3
+0.7
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.9
+0.9
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+1.1
+0.2
+0.5
+0.0
+0.3
auxotrophy
Dropout Complete
+1.4
+0.1
+0.4
+1.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+1.1
+0.4
+0.3
+1.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.4
+0.2
+0.3
+1.0
+0.6
auxotrophy
YNB Glucose
+1.5
+0.1
+1.1
+1.0
+0.2
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