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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14180 and 14181 are separated by 189 nucleotides
14181 and 14182 are separated by 168 nucleotides
14182 and 14183 are separated by 380 nucleotides
14183 and 14184 are separated by 1450 nucleotides
mRNA_5812: 14180 - K02831 RAD53 ser/thr/tyr protein kinase RAD53, at 993,823 to 996,800
14180
mRNA_5813: 14181 - K15340 DCLRE1A, SNM1A, PSO2 DNA cross-link repair 1A protein, at 996,990 to 1,000,538
14181
mRNA_5814: 14182 - K06669 SMC3, CSPG6 structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6), at 1,000,707 to 1,005,630
14182
mRNA_5815: 14183 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 1,006,011 to 1,008,191
14183
mRNA_5816: 14184 - KOG1437 Fasciclin and related adhesion glycoproteins, at 1,009,642 to 1,012,931
14184
Group
Condition
mRNA
_5812
mRNA
_5813
mRNA
_5814
mRNA
_5815
mRNA
_5816
14180
14181
14182
14183
14184
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
N.D.
-0.7
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.0
N.D.
-0.8
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
-0.7
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.4
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
N.D.
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.0
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.3
N.D.
-0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
N.D.
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
N.D.
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.4
N.D.
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose
-0.3
+0.1
N.D.
+0.3
+0.1
auxotrophy
Dropout Complete
-0.4
+0.2
N.D.
+0.5
+0.1
growth on ypd
YPD
-0.1
+0.4
N.D.
-0.0
+0.2
growth on oleic acid
YNB Glucose
+0.0
+0.1
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
N.D.
+0.5
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
N.D.
+0.8
+0.2
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