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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14187 and 14188 are separated by 184 nucleotides
14188 and 14189 are separated by 102 nucleotides
14189 and 14190 are separated by 774 nucleotides
14190 and 14191 are separated by 469 nucleotides
mRNA_5819: 14187 - K10761 THG1 tRNA(His) guanylyltransferase, at 1,019,559 to 1,020,828
14187
mRNA_5820: 14188 - K11763 RSC9 chromatin structure-remodeling complex subunit RSC9, at 1,021,013 to 1,023,514
14188
mRNA_5821: 14189 - SUPERFAMILY--SSF52047, at 1,023,617 to 1,025,042
14189
mRNA_5822: 14190 - SUPERFAMILY--SSF52047, at 1,025,817 to 1,027,407
14190
mRNA_5823: 14191 - SUPERFAMILY--SSF52047, at 1,027,877 to 1,028,999
14191
Group
Condition
mRNA
_5819
mRNA
_5820
mRNA
_5821
mRNA
_5822
mRNA
_5823
14187
14188
14189
14190
14191
growth on ypd
YPD
N.D.
-0.1
-0.8
-0.2
-0.6
auxotrophy
Dropout Complete
N.D.
-0.9
-0.1
-0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.1
-1.0
-0.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-1.0
-0.1
+0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.7
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
-0.5
-0.0
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
-0.3
-0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
+0.3
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.2
+0.4
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.1
-0.4
-0.3
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.2
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.7
+0.3
-0.8
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
-0.1
-0.4
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.5
+0.3
-0.5
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.2
-0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.4
+0.3
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.4
+0.6
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.5
+0.7
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.7
+0.9
+0.8
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
+0.5
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.5
+0.8
+0.1
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