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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14191 and 14192 are separated by 924 nucleotides
14192 and 14193 are separated by 610 nucleotides
14193 and 14194 are separated by 298 nucleotides
14194 and 14195 are separated by 382 nucleotides
mRNA_5823: 14191 - SUPERFAMILY--SSF52047, at 1,027,877 to 1,028,999
14191
mRNA_5824: 14192 - Hypothetical Protein, at 1,029,924 to 1,031,060
14192
mRNA_5825: 14193 - Hypothetical Protein, at 1,031,671 to 1,033,379
14193
mRNA_5826: 14194 - SUPERFAMILY--SSF52047, at 1,033,678 to 1,034,925
14194
mRNA_5827: 14195 - K04518 pheA2 prephenate dehydratase, at 1,035,308 to 1,036,218
14195
Group
Condition
mRNA
_5823
mRNA
_5824
mRNA
_5825
mRNA
_5826
mRNA
_5827
14191
14192
14193
14194
14195
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
N.D.
-0.5
-3.5
auxotrophy
YNB Glucose
+0.0
-0.1
N.D.
+0.1
-4.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.2
N.D.
-0.9
-2.4
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
N.D.
-0.3
-3.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
N.D.
-0.0
-3.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.2
N.D.
-0.1
-3.4
auxotrophy
Dropout Complete
-0.5
-0.1
N.D.
+0.1
-3.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
+1.0
-4.0
growth on oleic acid
YNB Glucose
-0.2
+0.1
N.D.
+0.2
-3.4
growth on oleic acid
YNB Oleic Acid
-0.3
+0.0
N.D.
+0.3
-3.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.4
N.D.
-0.8
-2.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.6
N.D.
+1.2
-3.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.2
N.D.
+1.5
-3.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.3
N.D.
-0.4
-2.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.0
N.D.
-0.3
-1.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.7
N.D.
+1.9
-2.7
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
N.D.
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.1
N.D.
+0.1
-0.3
growth on ypd
YPD
-0.6
+0.3
N.D.
+1.2
-0.3
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