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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14193 and 14194 are separated by 298 nucleotides
14194 and 14195 are separated by 382 nucleotides
14195 and 14196 are separated by 418 nucleotides
14196 and 14197 are separated by 179 nucleotides
mRNA_5825: 14193 - Hypothetical Protein, at 1,031,671 to 1,033,379
14193
mRNA_5826: 14194 - SUPERFAMILY--SSF52047, at 1,033,678 to 1,034,925
14194
mRNA_5827: 14195 - K04518 pheA2 prephenate dehydratase, at 1,035,308 to 1,036,218
14195
mRNA_5828: 14196 - KOG0725 Reductases with broad range of substrate specificities, at 1,036,637 to 1,037,941
14196
mRNA_5829: 14197 - K00228 CPOX, hemF coproporphyrinogen III oxidase, at 1,038,121 to 1,039,722
14197
Group
Condition
mRNA
_5825
mRNA
_5826
mRNA
_5827
mRNA
_5828
mRNA
_5829
14193
14194
14195
14196
14197
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
-3.5
-0.0
+0.2
auxotrophy
YNB Glucose
N.D.
+0.1
-4.2
-0.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.9
-2.4
+0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
-3.3
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
-3.2
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.8
-2.2
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-3.4
-0.0
+0.4
auxotrophy
Dropout Complete
N.D.
+0.1
-3.1
-0.2
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.2
-3.4
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-3.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+1.0
-4.0
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.5
-3.9
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+1.2
-3.6
+0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-1.6
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
-2.1
+0.2
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.3
-0.8
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+1.9
-2.7
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.3
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.1
-0.1
+0.0
growth on ypd
YPD
N.D.
+1.2
-0.3
-0.1
-0.0
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