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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14196 and 14197 are separated by 179 nucleotides
14197 and 14198 are separated by 452 nucleotides
14198 and 14199 are separated by 136 nucleotides
14199 and 14200 are separated by 272 nucleotides
mRNA_5828: 14196 - KOG0725 Reductases with broad range of substrate specificities, at 1,036,637 to 1,037,941
14196
mRNA_5829: 14197 - K00228 CPOX, hemF coproporphyrinogen III oxidase, at 1,038,121 to 1,039,722
14197
mRNA_5830: 14198 - HMMPfam-Mitochondrial protein Pet127-PF08634, at 1,040,175 to 1,043,789
14198
mRNA_5831: 14199 - KOG1198 Zinc-binding oxidoreductase, at 1,043,926 to 1,045,308
14199
mRNA_5832: 14200 - K02863 RP-L1, MRPL1, rplA large subunit ribosomal protein L1, at 1,045,581 to 1,047,659
14200
Group
Condition
mRNA
_5828
mRNA
_5829
mRNA
_5830
mRNA
_5831
mRNA
_5832
14196
14197
14198
14199
14200
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.4
N.D.
-0.0
-0.4
growth on ypd
YPD
-0.1
-0.0
N.D.
+0.4
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
N.D.
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
N.D.
+0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
N.D.
+0.3
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.1
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.2
N.D.
+0.2
-0.1
auxotrophy
Dropout Complete
-0.2
+0.3
N.D.
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
N.D.
+0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
N.D.
+0.6
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
N.D.
+0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.4
N.D.
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
+0.2
-0.0
N.D.
+0.2
+0.3
auxotrophy
YNB Glucose
-0.0
+0.4
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
N.D.
+0.4
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
N.D.
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.4
N.D.
+0.3
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
N.D.
+0.5
+0.5
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