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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14197 and 14198 are separated by 452 nucleotides
14198 and 14199 are separated by 136 nucleotides
14199 and 14200 are separated by 272 nucleotides
14200 and 14201 are separated by 101 nucleotides
mRNA_5829: 14197 - K00228 CPOX, hemF coproporphyrinogen III oxidase, at 1,038,121 to 1,039,722
14197
mRNA_5830: 14198 - HMMPfam-Mitochondrial protein Pet127-PF08634, at 1,040,175 to 1,043,789
14198
mRNA_5831: 14199 - KOG1198 Zinc-binding oxidoreductase, at 1,043,926 to 1,045,308
14199
mRNA_5832: 14200 - K02863 RP-L1, MRPL1, rplA large subunit ribosomal protein L1, at 1,045,581 to 1,047,659
14200
mRNA_5833: 14201 - K09705 K09705 uncharacterized protein, at 1,047,761 to 1,048,668
14201
Group
Condition
mRNA
_5829
mRNA
_5830
mRNA
_5831
mRNA
_5832
mRNA
_5833
14197
14198
14199
14200
14201
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.0
-0.4
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.3
-0.2
-0.2
growth on ypd
YPD
-0.0
N.D.
+0.4
-0.9
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.3
-0.6
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
+0.1
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.3
-0.4
-0.3
auxotrophy
Dropout Complete
+0.3
N.D.
+0.0
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.2
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.4
-0.1
-0.2
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.6
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.3
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.4
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.1
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
N.D.
-0.0
+0.0
+0.1
auxotrophy
YNB Glucose
+0.4
N.D.
+0.3
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.2
+0.1
+0.6
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
+0.2
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.3
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.5
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
+0.3
+0.5
+0.0
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