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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14200 and 14201 are separated by 101 nucleotides
14201 and 14202 are separated by 277 nucleotides
14202 and 14204 are separated by 544 nucleotides
14204 and 14203 are separated by 119 nucleotides
mRNA_5832: 14200 - K02863 RP-L1, MRPL1, rplA large subunit ribosomal protein L1, at 1,045,581 to 1,047,659
14200
mRNA_5833: 14201 - K09705 K09705 uncharacterized protein, at 1,047,761 to 1,048,668
14201
mRNA_5834: 14202 - HMMPfam-Protein of unknown function (DUF1688)-PF07958, at 1,048,946 to 1,050,486
14202
mRNA_5836: 14204 - Hypothetical Protein, at 1,051,031 to 1,051,324
14204
mRNA_5835: 14203 - Hypothetical Protein, at 1,051,444 to 1,053,111
14203
Group
Condition
mRNA
_5832
mRNA
_5833
mRNA
_5834
mRNA
_5836
mRNA
_5835
14200
14201
14202
14204
14203
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.4
-1.0
-1.5
-1.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
-0.1
-0.7
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.6
-0.2
-0.1
-0.1
-0.5
auxotrophy
YNB Glucose
+0.1
-0.3
-0.7
+0.3
-0.3
auxotrophy
Dropout Complete
-0.1
-0.4
-0.1
+0.3
-0.4
growth on ypd
YPD
-0.9
-0.2
-0.2
+0.4
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
-0.5
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.2
-0.3
-0.1
growth on oleic acid
YNB Glucose
+0.1
-0.0
-0.2
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.4
-0.3
+0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.2
-0.1
-1.0
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
+0.3
-0.8
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.0
-0.8
+0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.1
+0.4
-0.6
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.3
-0.1
-0.6
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.3
+0.4
-0.4
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.0
+0.3
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
-0.4
-0.5
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
+0.6
-0.3
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.6
-0.7
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.1
+0.4
-0.1
+0.4
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