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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14207 and 14208 are separated by 286 nucleotides
14208 and 14209 are separated by 230 nucleotides
14209 and 14210 are separated by 109 nucleotides
14210 and 14211 are separated by 290 nucleotides
mRNA_5839: 14207 - KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily), at 1,057,986 to 1,059,874
14207
mRNA_5840: 14208 - Hypothetical Protein, at 1,060,161 to 1,062,503
14208
mRNA_5841: 14209 - KOG1577 Aldo/keto reductase family proteins, at 1,062,734 to 1,064,125
14209
mRNA_5842: 14210 - K04508 TBL1 transducin (beta)-like 1, at 1,064,235 to 1,067,284
14210
mRNA_5843: 14211 - HMMPfam-Tim10/DDP family zinc finger-PF02953, at 1,067,575 to 1,068,136
14211
Group
Condition
mRNA
_5839
mRNA
_5840
mRNA
_5841
mRNA
_5842
mRNA
_5843
14207
14208
14209
14210
14211
auxotrophy
Dropout Complete
-0.4
+0.0
-0.3
-0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
-0.2
+0.4
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.3
+0.0
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
+0.1
-0.4
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.5
-0.0
+0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
+0.1
+0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
+0.1
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.0
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
+0.1
-0.2
-0.0
auxotrophy
YNB Glucose
+0.0
+0.3
+0.0
+0.1
-0.5
growth on oleic acid
YNB Glucose
-0.1
+0.2
+0.2
-0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
+0.1
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
+0.0
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
+0.0
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.3
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
-0.0
+0.4
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.4
-0.2
+0.3
+0.6
growth on ypd
YPD
+0.0
+0.0
+0.2
-0.1
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.2
+0.1
-0.2
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.2
+0.1
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
+0.2
-0.0
+0.3
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