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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14208 and 14209 are separated by 230 nucleotides
14209 and 14210 are separated by 109 nucleotides
14210 and 14211 are separated by 290 nucleotides
14211 and 14212 are separated by 323 nucleotides
mRNA_5840: 14208 - Hypothetical Protein, at 1,060,161 to 1,062,503
14208
mRNA_5841: 14209 - KOG1577 Aldo/keto reductase family proteins, at 1,062,734 to 1,064,125
14209
mRNA_5842: 14210 - K04508 TBL1 transducin (beta)-like 1, at 1,064,235 to 1,067,284
14210
mRNA_5843: 14211 - HMMPfam-Tim10/DDP family zinc finger-PF02953, at 1,067,575 to 1,068,136
14211
mRNA_5844: 14212 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF160240,SUPERFAMILY--SSF161111, at 1,068,460 to 1,070,269
14212
Group
Condition
mRNA
_5840
mRNA
_5841
mRNA
_5842
mRNA
_5843
mRNA
_5844
14208
14209
14210
14211
14212
auxotrophy
Dropout Complete
+0.0
-0.3
-0.1
-0.4
-1.2
auxotrophy
YNB Glucose
+0.3
+0.0
+0.1
-0.5
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.2
+0.7
-1.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
-0.2
-0.5
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.1
+0.3
-0.0
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.2
+0.3
+0.6
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
+0.2
+0.2
-1.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.2
-0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
+0.4
-0.6
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.1
-0.4
+0.5
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
+0.2
-0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.0
-0.4
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.2
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.0
+0.1
-0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.2
-0.3
+0.4
growth on oleic acid
YNB Glucose
+0.2
+0.2
-0.5
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
-0.0
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.0
+0.2
+0.3
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
+0.4
+0.3
+0.4
growth on ypd
YPD
+0.0
+0.2
-0.1
+0.6
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.0
+0.2
+0.3
+0.7
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