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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14210 and 14211 are separated by 290 nucleotides
14211 and 14212 are separated by 323 nucleotides
14212 and 14213 are separated by 1800 nucleotides
14213 and 14214 are separated by 109 nucleotides
mRNA_5842: 14210 - K04508 TBL1 transducin (beta)-like 1, at 1,064,235 to 1,067,284
14210
mRNA_5843: 14211 - HMMPfam-Tim10/DDP family zinc finger-PF02953, at 1,067,575 to 1,068,136
14211
mRNA_5844: 14212 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF160240,SUPERFAMILY--SSF161111, at 1,068,460 to 1,070,269
14212
mRNA_5845: 14213 - KOG1577 Aldo/keto reductase family proteins, at 1,072,070 to 1,073,549
14213
mRNA_5846: 14214 - K04508 TBL1 transducin (beta)-like 1, at 1,073,659 to 1,076,277
14214
Group
Condition
mRNA
_5842
mRNA
_5843
mRNA
_5844
mRNA
_5845
mRNA
_5846
14210
14211
14212
14213
14214
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.7
-1.3
+0.0
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.4
+0.2
-0.1
-1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
-0.4
+0.0
-1.0
auxotrophy
Dropout Complete
-0.1
-0.4
-1.2
+0.0
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.0
-0.6
-0.0
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.6
+0.3
+0.2
-1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.2
-1.0
+0.3
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
-0.3
+0.0
-0.1
auxotrophy
YNB Glucose
+0.1
-0.5
-0.7
-0.1
+0.6
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
-0.3
+0.2
-0.5
growth on oleic acid
YNB Glucose
-0.5
+0.1
+0.3
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
+0.4
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.5
-0.2
+0.1
+0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
+0.1
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.3
+0.4
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.3
+0.2
+0.9
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.6
-0.7
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.5
-0.0
+0.4
+0.5
growth on ypd
YPD
-0.1
+0.6
+0.4
+0.9
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
+0.9
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
+0.7
+0.3
+0.9
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