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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14211 and 14212 are separated by 323 nucleotides
14212 and 14213 are separated by 1800 nucleotides
14213 and 14214 are separated by 109 nucleotides
14214 and 14215 are separated by 719 nucleotides
mRNA_5843: 14211 - HMMPfam-Tim10/DDP family zinc finger-PF02953, at 1,067,575 to 1,068,136
14211
mRNA_5844: 14212 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF160240,SUPERFAMILY--SSF161111, at 1,068,460 to 1,070,269
14212
mRNA_5845: 14213 - KOG1577 Aldo/keto reductase family proteins, at 1,072,070 to 1,073,549
14213
mRNA_5846: 14214 - K04508 TBL1 transducin (beta)-like 1, at 1,073,659 to 1,076,277
14214
mRNA_5847: 14215 - K17780 TIM8 mitochondrial import inner membrane translocase subunit TIM8, at 1,076,997 to 1,077,527
14215
Group
Condition
mRNA
_5843
mRNA
_5844
mRNA
_5845
mRNA
_5846
mRNA
_5847
14211
14212
14213
14214
14215
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.6
-0.0
-0.7
-1.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.2
-0.1
-1.3
-0.8
auxotrophy
Dropout Complete
-0.4
-1.2
+0.0
+0.5
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.4
+0.0
-1.0
-0.2
auxotrophy
YNB Glucose
-0.5
-0.7
-0.1
+0.6
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-1.0
+0.3
-0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.3
+0.2
-1.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-1.3
+0.0
-1.0
+1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.4
-0.4
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.2
+0.1
+0.9
-0.7
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
+0.0
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.4
+0.0
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.3
-0.3
+0.2
-0.5
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
+0.2
+0.9
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.7
+0.4
+0.4
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-0.0
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.1
+0.3
+0.2
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.0
+0.4
+0.5
+0.1
growth on ypd
YPD
+0.6
+0.4
+0.9
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.9
+0.2
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.7
+0.3
+0.9
-0.0
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