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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14212 and 14213 are separated by 1800 nucleotides
14213 and 14214 are separated by 109 nucleotides
14214 and 14215 are separated by 719 nucleotides
14215 and 14216 are separated by 735 nucleotides
mRNA_5844: 14212 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF160240,SUPERFAMILY--SSF161111, at 1,068,460 to 1,070,269
14212
mRNA_5845: 14213 - KOG1577 Aldo/keto reductase family proteins, at 1,072,070 to 1,073,549
14213
mRNA_5846: 14214 - K04508 TBL1 transducin (beta)-like 1, at 1,073,659 to 1,076,277
14214
mRNA_5847: 14215 - K17780 TIM8 mitochondrial import inner membrane translocase subunit TIM8, at 1,076,997 to 1,077,527
14215
mRNA_5848: 14216 - Hypothetical Protein, at 1,078,263 to 1,078,813
14216
Group
Condition
mRNA
_5844
mRNA
_5845
mRNA
_5846
mRNA
_5847
mRNA
_5848
14212
14213
14214
14215
14216
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.1
-1.3
-0.8
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.0
-0.7
-1.4
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
+0.0
-1.0
+1.1
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.0
-1.0
-0.2
-0.2
auxotrophy
Dropout Complete
-1.2
+0.0
+0.5
-0.9
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
+0.3
-0.3
-0.2
-0.3
auxotrophy
YNB Glucose
-0.7
-0.1
+0.6
-0.8
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.4
-0.4
-0.4
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.2
-1.1
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
+0.9
-0.6
-0.7
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
-0.5
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.0
-0.1
+0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.7
+0.4
+0.4
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.9
-0.7
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.0
-0.1
-0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
+0.1
+0.3
-0.2
growth on oleic acid
YNB Glucose
+0.3
+0.2
-0.2
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.4
+0.5
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+0.3
+0.9
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
+0.2
+0.5
-0.1
+0.2
growth on ypd
YPD
+0.4
+0.9
-0.3
+0.3
+0.6
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