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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14214 and 14215 are separated by 719 nucleotides
14215 and 14216 are separated by 735 nucleotides
14216 and 14217 are separated by 1036 nucleotides
14217 and 14218 are separated by 665 nucleotides
mRNA_5846: 14214 - K04508 TBL1 transducin (beta)-like 1, at 1,073,659 to 1,076,277
14214
mRNA_5847: 14215 - K17780 TIM8 mitochondrial import inner membrane translocase subunit TIM8, at 1,076,997 to 1,077,527
14215
mRNA_5848: 14216 - Hypothetical Protein, at 1,078,263 to 1,078,813
14216
mRNA_5849: 14217 - SMART-Furin-like repeats-SM00261,SUPERFAMILY--SSF57184, at 1,079,850 to 1,082,159
14217
mRNA_5850: 14218 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1,082,825 to 1,084,341
14218
Group
Condition
mRNA
_5846
mRNA
_5847
mRNA
_5848
mRNA
_5849
mRNA
_5850
14214
14215
14216
14217
14218
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-0.8
-0.4
-0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-1.4
+0.4
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.2
-0.3
-0.7
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
-0.2
-0.2
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
+0.2
-0.3
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.5
+0.2
-0.1
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.4
-0.0
-0.1
+0.2
auxotrophy
Dropout Complete
+0.5
-0.9
-0.2
-0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+1.1
-1.1
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.9
-0.6
-0.7
-0.1
+0.2
auxotrophy
YNB Glucose
+0.6
-0.8
-0.1
-0.3
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
-0.2
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.3
+0.3
+0.0
growth on ypd
YPD
-0.3
+0.3
+0.6
-0.3
-0.2
growth on oleic acid
YNB Glucose
-0.2
+0.5
-0.2
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.9
-0.7
-0.2
-0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.4
-0.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.1
-0.3
-0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
-0.2
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
-0.0
-0.4
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.1
+0.2
-0.2
+0.2
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