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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14217 and 14218 are separated by 665 nucleotides
14218 and 14219 are separated by 543 nucleotides
14219 and 14220 are separated by 203 nucleotides
14220 and 14221 are separated by 125 nucleotides
mRNA_5849: 14217 - SMART-Furin-like repeats-SM00261,SUPERFAMILY--SSF57184, at 1,079,850 to 1,082,159
14217
mRNA_5850: 14218 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1,082,825 to 1,084,341
14218
mRNA_5851: 14219 - SUPERFAMILY--SSF51735, at 1,084,885 to 1,085,792
14219
mRNA_5852: 14220 - K14856 SDA1, SDAD1 protein SDA1, at 1,085,996 to 1,089,150
14220
mRNA_5853: 14221 - K15378 SLC45A1_2_4 solute carrier family 45, member 1/2/4, at 1,089,276 to 1,092,744
14221
Group
Condition
mRNA
_5849
mRNA
_5850
mRNA
_5851
mRNA
_5852
mRNA
_5853
14217
14218
14219
14220
14221
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.2
+0.4
N.D.
-1.4
growth on ypd
YPD
-0.3
-0.2
-0.6
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.0
+0.2
N.D.
-0.6
growth on oleic acid
YNB Glucose
-0.0
+0.1
-0.5
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
+0.1
N.D.
-0.4
auxotrophy
YNB Glucose
-0.3
+0.2
-0.5
N.D.
+0.2
auxotrophy
Dropout Complete
-0.2
+0.0
-0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.3
+0.4
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
+0.6
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
-0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
+0.4
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.2
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.0
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
+0.6
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
+0.5
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.2
+0.5
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
+0.6
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.1
N.D.
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.6
N.D.
+0.1
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