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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14222 and 14223 are separated by 245 nucleotides
14223 and 14224 are separated by 506 nucleotides
14224 and 14225 are separated by 117 nucleotides
14225 and 14226 are separated by 652 nucleotides
mRNA_5854: 14222 - K12826 SF3A2, SAP62 splicing factor 3A subunit 2, at 1,093,041 to 1,094,048
14222
mRNA_5855: 14223 - Hypothetical Protein, at 1,094,294 to 1,098,449
14223
mRNA_5856: 14224 - K03357 APC10, DOC1 anaphase-promoting complex subunit 10, at 1,098,956 to 1,099,820
14224
mRNA_5857: 14225 - K01875 SARS, serS seryl-tRNA synthetase, at 1,099,938 to 1,101,615
14225
mRNA_5858: 14226 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 1,102,268 to 1,103,746
14226
Group
Condition
mRNA
_5854
mRNA
_5855
mRNA
_5856
mRNA
_5857
mRNA
_5858
14222
14223
14224
14225
14226
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.5
-0.8
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.9
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-1.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.7
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.9
+0.0
N.D.
+0.1
auxotrophy
Dropout Complete
N.D.
+0.3
-1.0
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.5
N.D.
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.4
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-0.8
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.8
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
-0.4
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose
N.D.
+0.8
-1.0
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.6
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-0.4
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.2
N.D.
+0.5
growth on ypd
YPD
N.D.
+0.5
+0.3
N.D.
+0.0
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