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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14225 and 14226 are separated by 652 nucleotides
14226 and 14227 are separated by 424 nucleotides
14227 and 14228 are separated by 213 nucleotides
14228 and 14229 are separated by 333 nucleotides
mRNA_5857: 14225 - K01875 SARS, serS seryl-tRNA synthetase, at 1,099,938 to 1,101,615
14225
mRNA_5858: 14226 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 1,102,268 to 1,103,746
14226
mRNA_5859: 14227 - BLAST probable atp-binding cassette transporter [Ceraceosor..., at 1,104,171 to 1,104,734
14227
mRNA_5860: 14228 - K19770 RNASEK ribonuclease kappa, at 1,104,948 to 1,105,402
14228
mRNA_5861: 14229 - K16261 YAT yeast amino acid transporter, at 1,105,736 to 1,108,814
14229
Group
Condition
mRNA
_5857
mRNA
_5858
mRNA
_5859
mRNA
_5860
mRNA
_5861
14225
14226
14227
14228
14229
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
N.D.
-0.7
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
N.D.
-0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
N.D.
-0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
N.D.
-0.3
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
N.D.
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
N.D.
-0.6
+0.2
growth on oleic acid
YNB Glucose
N.D.
-0.0
N.D.
+0.0
-0.2
auxotrophy
Dropout Complete
N.D.
-0.0
N.D.
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose
N.D.
+0.0
N.D.
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
N.D.
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
N.D.
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
N.D.
+0.6
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
N.D.
+0.1
+0.2
growth on ypd
YPD
N.D.
+0.0
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
+0.6
+0.1
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