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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14226 and 14227 are separated by 424 nucleotides
14227 and 14228 are separated by 213 nucleotides
14228 and 14229 are separated by 333 nucleotides
14229 and 14230 are separated by 1759 nucleotides
mRNA_5858: 14226 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 1,102,268 to 1,103,746
14226
mRNA_5859: 14227 - BLAST probable atp-binding cassette transporter [Ceraceosor..., at 1,104,171 to 1,104,734
14227
mRNA_5860: 14228 - K19770 RNASEK ribonuclease kappa, at 1,104,948 to 1,105,402
14228
mRNA_5861: 14229 - K16261 YAT yeast amino acid transporter, at 1,105,736 to 1,108,814
14229
mRNA_5862: 14230 - K14998 SURF1, SHY1 surfeit locus 1 family protein, at 1,110,574 to 1,111,803
14230
Group
Condition
mRNA
_5858
mRNA
_5859
mRNA
_5860
mRNA
_5861
mRNA
_5862
14226
14227
14228
14229
14230
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.5
-0.2
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.6
+0.2
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.7
-0.3
+0.2
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-0.6
+0.0
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
N.D.
+0.1
-0.2
-1.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
-0.3
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
-0.2
+0.1
-0.2
auxotrophy
YNB Glucose
+0.0
N.D.
+0.0
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.2
+0.1
-0.7
auxotrophy
Dropout Complete
-0.0
N.D.
-0.1
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.0
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.3
+0.0
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.6
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
+0.0
+0.1
+0.4
growth on ypd
YPD
+0.0
N.D.
+0.4
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.6
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
+0.1
-0.0
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
N.D.
-0.2
+0.0
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+0.1
+0.2
+0.8
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