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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14227 and 14228 are separated by 213 nucleotides
14228 and 14229 are separated by 333 nucleotides
14229 and 14230 are separated by 1759 nucleotides
14230 and 14231 are separated by 210 nucleotides
mRNA_5859: 14227 - BLAST probable atp-binding cassette transporter [Ceraceosor..., at 1,104,171 to 1,104,734
14227
mRNA_5860: 14228 - K19770 RNASEK ribonuclease kappa, at 1,104,948 to 1,105,402
14228
mRNA_5861: 14229 - K16261 YAT yeast amino acid transporter, at 1,105,736 to 1,108,814
14229
mRNA_5862: 14230 - K14998 SURF1, SHY1 surfeit locus 1 family protein, at 1,110,574 to 1,111,803
14230
mRNA_5863: 14231 - K09281 K09281 copper-fist transcription factor, at 1,112,014 to 1,113,676
14231
Group
Condition
mRNA
_5859
mRNA
_5860
mRNA
_5861
mRNA
_5862
mRNA
_5863
14227
14228
14229
14230
14231
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.1
+0.2
-2.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
-0.2
-1.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.6
+0.2
-0.9
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.2
-1.4
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
-0.6
+0.0
-0.6
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
-0.4
+0.1
-1.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.6
+0.1
-0.3
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.7
-0.3
+0.2
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.2
+0.2
+0.2
auxotrophy
YNB Glucose
N.D.
+0.0
-0.0
-0.4
+0.8
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.1
+0.2
+0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
+0.0
+0.6
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
+0.1
+0.4
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.1
-0.7
+1.2
auxotrophy
Dropout Complete
N.D.
-0.1
+0.1
+0.1
+0.9
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.6
+0.1
+0.1
+0.2
growth on ypd
YPD
N.D.
+0.4
+0.2
-0.2
+1.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.1
-0.2
+3.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.0
+0.9
+3.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.2
+0.8
+2.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.0
+0.6
+3.5
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