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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14232 and 14233 are separated by 275 nucleotides
14233 and 14234 are separated by 284 nucleotides
14234 and 14235 are separated by 222 nucleotides
14235 and 14236 are separated by 203 nucleotides
mRNA_5864: 14232 - K01322 PREP prolyl oligopeptidase, at 1,113,887 to 1,116,821
14232
mRNA_5865: 14233 - KOG0800 FOG Predicted E3 ubiquitin ligase, at 1,117,097 to 1,118,879
14233
mRNA_5866: 14234 - KOG1454 Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily), at 1,119,164 to 1,122,161
14234
mRNA_5867: 14235 - K02950 RP-S12, MRPS12, rpsL small subunit ribosomal protein S12, at 1,122,384 to 1,123,037
14235
mRNA_5868: 14236 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1,123,241 to 1,124,381
14236
Group
Condition
mRNA
_5864
mRNA
_5865
mRNA
_5866
mRNA
_5867
mRNA
_5868
14232
14233
14234
14235
14236
growth on oleic acid
YNB Glucose
-0.3
+0.0
-0.3
N.D.
-0.6
auxotrophy
Dropout Complete
-0.1
-0.2
-0.7
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
-0.3
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
-0.3
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
-0.2
N.D.
-0.2
auxotrophy
YNB Glucose
-0.0
-0.1
-0.5
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.0
-0.4
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.5
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
+0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
-0.4
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.0
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
-0.3
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
-0.1
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
+0.1
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
-0.4
N.D.
+0.7
growth on ypd
YPD
+0.0
+0.1
-0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.0
+0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
+0.6
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.5
+0.6
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.4
+0.7
N.D.
+1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.4
+0.7
N.D.
+1.2
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