Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 14233 and 14234 are separated by 284 nucleotides14234 and 14235 are separated by 222 nucleotides14235 and 14236 are separated by 203 nucleotides14236 and 14237 are separated by 341 nucleotides mRNA_5865: 14233 - KOG0800 FOG Predicted E3 ubiquitin ligase, at 1,117,097 to 1,118,879 14233 mRNA_5866: 14234 - KOG1454 Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily), at 1,119,164 to 1,122,161 14234 mRNA_5867: 14235 - K02950 RP-S12, MRPS12, rpsL small subunit ribosomal protein S12, at 1,122,384 to 1,123,037 14235 mRNA_5868: 14236 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1,123,241 to 1,124,381 14236 mRNA_5869: 14237 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 1,124,723 to 1,126,548 14237
Group Condition mRNA_5865 mRNA_5866 mRNA_5867 mRNA_5868 mRNA_5869
14233 14234 14235 14236 14237
auxotrophy Dropout Complete -0.2 -0.7 N.D. -0.2 N.D.
growth on oleic acid YNB Glucose +0.0 -0.3 N.D. -0.6 N.D.
growth on oleic acid YNB Oleic Acid -0.3 -0.3 N.D. -0.3 N.D.
auxotrophy YNB Glucose -0.1 -0.5 N.D. -0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.3 -0.3 N.D. -0.1 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.5 N.D. +0.1 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.2 N.D. -0.2 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.0 -0.4 N.D. -0.0 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.2 +0.1 N.D. -0.3 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.0 N.D. -0.0 N.D.
growth on ricinoleic acid YNB Glucose +0.3 -0.4 N.D. +0.1 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.1 N.D. +0.2 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.3 N.D. +0.5 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 -0.1 N.D. +0.0 N.D.
growth on ypd YPD +0.1 -0.2 N.D. +0.3 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.4 N.D. +0.7 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 +0.1 N.D. +0.4 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.6 N.D. +0.9 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.5 +0.6 N.D. +0.9 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 +0.7 N.D. +1.1 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.4 +0.7 N.D. +1.2 N.D.
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