Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 14235 and 14236 are separated by 203 nucleotides14236 and 14237 are separated by 341 nucleotides14237 and 14238 are separated by 193 nucleotides14238 and 14239 are separated by 580 nucleotides mRNA_5867: 14235 - K02950 RP-S12, MRPS12, rpsL small subunit ribosomal protein S12, at 1,122,384 to 1,123,037 14235 mRNA_5868: 14236 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1,123,241 to 1,124,381 14236 mRNA_5869: 14237 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 1,124,723 to 1,126,548 14237 mRNA_5870: 14238 - Hypothetical Protein, at 1,126,742 to 1,127,263 14238 mRNA_5871: 14239 - HMMPfam-zinc finger of C3HC4-type, RING-PF15227,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 1,127,844 to 1,131,373 14239
Group Condition mRNA_5867 mRNA_5868 mRNA_5869 mRNA_5870 mRNA_5871
14235 14236 14237 14238 14239
growth on oleic acid YNB Oleic Acid N.D. -0.3 N.D. -0.2 -0.1
growth on oleic acid YNB Glucose N.D. -0.6 N.D. +0.2 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. +0.0 N.D. -0.4 -0.0
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.3 N.D. +0.1 -0.1
facs on lipid accumulation Sorted High BODIPY Gate N.D. -0.2 N.D. +0.0 -0.2
auxotrophy YNB Glucose 75mM Methionine N.D. -0.1 N.D. -0.3 +0.1
auxotrophy Dropout Complete N.D. -0.2 N.D. +0.0 +0.0
auxotrophy YNB Glucose N.D. -0.1 N.D. -0.2 +0.1
facs on lipid accumulation Sorted No BODIPY Gate N.D. +0.5 N.D. -0.3 -0.4
ypd buoyancy 40 hrs Median Buoyancy N.D. -0.0 N.D. +0.1 -0.1
auxotrophy YNB Glucose 75mM Arginine N.D. +0.1 N.D. -0.1 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid N.D. +0.4 N.D. -0.1 -0.1
ypd buoyancy 40 hrs High Buoyancy N.D. +0.2 N.D. +0.1 -0.0
growth on ricinoleic acid YNB Glucose N.D. +0.1 N.D. +0.0 +0.1
growth on ypd YPD N.D. +0.3 N.D. -0.1 +0.3
facs on lipid accumulation Sorted Low BODIPY Gate N.D. +0.7 N.D. +0.1 -0.2
ypd buoyancy 40 hrs No Buoyancy Separation N.D. -0.0 N.D. +0.6 +0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. +0.9 N.D. +0.2 +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. +1.1 N.D. +0.1 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. +0.9 N.D. +0.5 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. +1.2 N.D. +0.8 +0.4
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