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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14236 and 14237 are separated by 341 nucleotides
14237 and 14238 are separated by 193 nucleotides
14238 and 14239 are separated by 580 nucleotides
14239 and 14240 are separated by 119 nucleotides
mRNA_5868: 14236 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1,123,241 to 1,124,381
14236
mRNA_5869: 14237 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 1,124,723 to 1,126,548
14237
mRNA_5870: 14238 - Hypothetical Protein, at 1,126,742 to 1,127,263
14238
mRNA_5871: 14239 - HMMPfam-zinc finger of C3HC4-type, RING-PF15227,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 1,127,844 to 1,131,373
14239
mRNA_5872: 14240 - HMMPfam-Pleckstrin homology domain-PF15404,SMART-Pleckstrin homology domain.-SM00233, at 1,131,493 to 1,135,652
14240
Group
Condition
mRNA
_5868
mRNA
_5869
mRNA
_5870
mRNA
_5871
mRNA
_5872
14236
14237
14238
14239
14240
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
-0.4
-0.0
-2.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
-0.1
-0.1
-2.4
growth on oleic acid
YNB Glucose
-0.6
N.D.
+0.2
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
-0.2
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.0
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
N.D.
-0.3
-0.4
-0.4
auxotrophy
Dropout Complete
-0.2
N.D.
+0.0
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
+0.1
-0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.0
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.3
+0.1
+0.3
auxotrophy
YNB Glucose
-0.1
N.D.
-0.2
+0.1
+0.3
growth on ypd
YPD
+0.3
N.D.
-0.1
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.1
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.1
-0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.1
-0.0
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
N.D.
+0.1
-0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.6
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
N.D.
+0.5
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
N.D.
+0.2
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.1
N.D.
+0.1
-0.0
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.2
N.D.
+0.8
+0.4
-0.0
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