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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14238 and 14239 are separated by 580 nucleotides
14239 and 14240 are separated by 119 nucleotides
14240 and 14241 are separated by 427 nucleotides
14241 and 14242 are separated by 834 nucleotides
mRNA_5870: 14238 - Hypothetical Protein, at 1,126,742 to 1,127,263
14238
mRNA_5871: 14239 - HMMPfam-zinc finger of C3HC4-type, RING-PF15227,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 1,127,844 to 1,131,373
14239
mRNA_5872: 14240 - HMMPfam-Pleckstrin homology domain-PF15404,SMART-Pleckstrin homology domain.-SM00233, at 1,131,493 to 1,135,652
14240
mRNA_5873: 14241 - K00761 upp, UPRT uracil phosphoribosyltransferase, at 1,136,080 to 1,137,305
14241
mRNA_5874: 14242 - K04536 GNB1 guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, at 1,138,140 to 1,139,450
14242
Group
Condition
mRNA
_5870
mRNA
_5871
mRNA
_5872
mRNA
_5873
mRNA
_5874
14238
14239
14240
14241
14242
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
+0.2
-4.6
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.3
+0.0
-3.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.4
-0.4
-1.2
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
+0.3
-1.3
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-2.4
-0.0
+1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.0
-2.0
+0.5
+1.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.0
-0.5
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
-0.3
-0.3
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.4
-0.5
+0.1
growth on ypd
YPD
-0.1
+0.3
-0.2
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
-0.2
+0.2
+0.5
auxotrophy
Dropout Complete
+0.0
+0.0
-0.2
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.2
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
+0.4
-0.0
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
+0.3
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
-0.6
+0.5
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.1
+0.2
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.0
+0.3
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
+0.6
-0.2
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.3
+0.0
+0.7
auxotrophy
YNB Glucose
-0.2
+0.1
+0.3
+0.4
+0.5
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