Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 14238 and 14239 are separated by 580 nucleotides14239 and 14240 are separated by 119 nucleotides14240 and 14241 are separated by 427 nucleotides14241 and 14242 are separated by 834 nucleotides mRNA_5870: 14238 - Hypothetical Protein, at 1,126,742 to 1,127,263 14238 mRNA_5871: 14239 - HMMPfam-zinc finger of C3HC4-type, RING-PF15227,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 1,127,844 to 1,131,373 14239 mRNA_5872: 14240 - HMMPfam-Pleckstrin homology domain-PF15404,SMART-Pleckstrin homology domain.-SM00233, at 1,131,493 to 1,135,652 14240 mRNA_5873: 14241 - K00761 upp, UPRT uracil phosphoribosyltransferase, at 1,136,080 to 1,137,305 14241 mRNA_5874: 14242 - K04536 GNB1 guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, at 1,138,140 to 1,139,450 14242
Group Condition mRNA_5870 mRNA_5871 mRNA_5872 mRNA_5873 mRNA_5874
14238 14239 14240 14241 14242
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 -0.2 +0.2 -4.6 +0.4
ypd buoyancy 40 hrs No Buoyancy Separation +0.6 +0.3 +0.0 -3.1 -0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.3 -0.4 -0.4 -1.2 +0.6
ypd buoyancy 40 hrs High Buoyancy +0.1 -0.0 +0.3 -1.3 -0.4
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 -0.1 -2.4 -0.0 +1.3
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -0.0 -2.0 +0.5 +1.0
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.1 +0.0 -0.5 +0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.0 -0.2 -0.3 -0.3 +0.4
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.1 +0.4 -0.5 +0.1
growth on ypd YPD -0.1 +0.3 -0.2 +0.1 +0.1
growth on oleic acid YNB Oleic Acid -0.2 -0.1 -0.2 +0.2 +0.5
auxotrophy Dropout Complete +0.0 +0.0 -0.2 +0.1 +0.3
growth on oleic acid YNB Glucose +0.2 -0.1 -0.2 +0.2 +0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.8 +0.4 -0.0 -0.2 -0.4
auxotrophy YNB Glucose 75mM Methionine -0.3 +0.1 +0.3 +0.1 +0.3
growth on ricinoleic acid YNB Glucose +0.0 +0.1 -0.6 +0.5 +0.7
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.5 -0.1 +0.2 +0.0 +0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 +0.0 +0.3 +0.1 +0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 -0.0 +0.6 -0.2 +0.5
auxotrophy YNB Glucose 75mM Arginine -0.1 +0.1 +0.3 +0.0 +0.7
auxotrophy YNB Glucose -0.2 +0.1 +0.3 +0.4 +0.5
remove
mRNA_5870
plot
remove
mRNA_5871
plot
remove
mRNA_5872
remove
mRNA_5873
plot
remove
mRNA_5874
plot