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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14245 and 14246 are separated by 182 nucleotides
14246 and 14247 are separated by 341 nucleotides
14247 and 14248 are separated by 275 nucleotides
14248 and 14249 are separated by 516 nucleotides
mRNA_5877: 14245 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 1,144,379 to 1,146,733
14245
mRNA_5878: 14246 - KOG4210 Nuclear localization sequence binding protein, at 1,146,916 to 1,148,820
14246
mRNA_5879: 14247 - KOG2624 Triglyceride lipase-cholesterol esterase, at 1,149,162 to 1,152,280
14247
mRNA_5880: 14248 - HMMPfam-Transglycosylase SLT domain-PF01464,SUPERFAMILY--SSF53955, at 1,152,556 to 1,154,002
14248
mRNA_5881: 14249 - BLAST related to embryonic protein DC-8 [Ustilago hordei], at 1,154,519 to 1,154,935
14249
Group
Condition
mRNA
_5877
mRNA
_5878
mRNA
_5879
mRNA
_5880
mRNA
_5881
14245
14246
14247
14248
14249
growth on ricinoleic acid
YNB Methylricinoleic Acid
-3.0
+0.2
+0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.7
+0.2
+0.1
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-2.2
+0.4
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.7
-0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-1.3
+0.1
+0.0
N.D.
auxotrophy
YNB Glucose
-0.2
-0.6
-0.2
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.6
-0.0
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.5
-0.2
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
-1.0
+0.1
+0.1
N.D.
auxotrophy
Dropout Complete
-0.2
-0.5
-0.0
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.8
-0.1
+0.4
N.D.
growth on ypd
YPD
+0.1
+0.1
-0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.3
+0.1
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.1
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.6
+0.2
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.9
-0.4
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.0
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.3
+0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.8
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.8
+0.5
+0.3
N.D.
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