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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14251 and 14252 are separated by 251 nucleotides
14252 and 14253 are separated by 168 nucleotides
14253 and 14254 are separated by 855 nucleotides
14254 and 14255 are separated by 440 nucleotides
mRNA_5883: 14251 - K09668 LARGE glycosyltransferase-like protein LARGE, at 1,158,522 to 1,160,297
14251
mRNA_5884: 14252 - K13830 ARO1 pentafunctional AROM polypeptide, at 1,160,549 to 1,165,878
14252
mRNA_5885: 14253 - KOG1424 Predicted GTP-binding protein MMR1, at 1,166,047 to 1,168,638
14253
mRNA_5886: 14254 - Hypothetical Protein, at 1,169,494 to 1,170,027
14254
mRNA_5887: 14255 - Hypothetical Protein, at 1,170,468 to 1,171,652
14255
Group
Condition
mRNA
_5883
mRNA
_5884
mRNA
_5885
mRNA
_5886
mRNA
_5887
14251
14252
14253
14254
14255
growth on ypd
YPD
-0.3
N.D.
-1.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.7
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.6
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
-0.7
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
N.D.
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.3
N.D.
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
N.D.
+0.9
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.6
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.8
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
N.D.
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
N.D.
+0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.5
N.D.
+0.5
N.D.
N.D.
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