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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14253 and 14254 are separated by 855 nucleotides
14254 and 14255 are separated by 440 nucleotides
14255 and 14256 are separated by 320 nucleotides
14256 and 14257 are separated by 895 nucleotides
mRNA_5885: 14253 - KOG1424 Predicted GTP-binding protein MMR1, at 1,166,047 to 1,168,638
14253
mRNA_5886: 14254 - Hypothetical Protein, at 1,169,494 to 1,170,027
14254
mRNA_5887: 14255 - Hypothetical Protein, at 1,170,468 to 1,171,652
14255
mRNA_5888: 14256 - K00688 PYG, glgP glycogen phosphorylase, at 1,171,973 to 1,175,579
14256
mRNA_5889: 14257 - K02977 RP-S27Ae, RPS27A small subunit ribosomal protein S27Ae, at 1,176,475 to 1,177,214
14257
Group
Condition
mRNA
_5885
mRNA
_5886
mRNA
_5887
mRNA
_5888
mRNA
_5889
14253
14254
14255
14256
14257
auxotrophy
Dropout Complete
-0.0
N.D.
N.D.
-0.1
-2.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
N.D.
-0.2
-2.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
N.D.
+0.1
-1.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
N.D.
N.D.
+0.3
-1.0
auxotrophy
YNB Glucose 75mM Arginine
-0.6
N.D.
N.D.
+0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
N.D.
+0.0
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
N.D.
+0.2
-1.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
N.D.
-0.1
-1.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
N.D.
N.D.
-0.2
-0.3
auxotrophy
YNB Glucose
-0.3
N.D.
N.D.
+0.0
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
N.D.
-0.1
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
N.D.
N.D.
+0.2
-1.7
growth on oleic acid
YNB Glucose
-0.1
N.D.
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
N.D.
-0.2
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
N.D.
+0.6
-0.8
growth on ypd
YPD
-1.1
N.D.
N.D.
-0.1
+1.0
growth on oleic acid
YNB Oleic Acid
+0.5
N.D.
N.D.
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
N.D.
+0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.8
N.D.
N.D.
+0.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.6
N.D.
N.D.
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.5
N.D.
N.D.
-0.1
+0.3
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