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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14255 and 14256 are separated by 320 nucleotides
14256 and 14257 are separated by 895 nucleotides
14257 and 14258 are separated by 344 nucleotides
14258 and 14259 are separated by 2247 nucleotides
mRNA_5887: 14255 - Hypothetical Protein, at 1,170,468 to 1,171,652
14255
mRNA_5888: 14256 - K00688 PYG, glgP glycogen phosphorylase, at 1,171,973 to 1,175,579
14256
mRNA_5889: 14257 - K02977 RP-S27Ae, RPS27A small subunit ribosomal protein S27Ae, at 1,176,475 to 1,177,214
14257
mRNA_5890: 14258 - K01876 DARS, aspS aspartyl-tRNA synthetase, at 1,177,559 to 1,180,094
14258
mRNA_5891: 14259 - K11788 ADE5 phosphoribosylamine--glycine ligase / phosphoribosylformylglycinamidine cyclo-ligase, at 1,182,342 to 1,185,171
14259
Group
Condition
mRNA
_5887
mRNA
_5888
mRNA
_5889
mRNA
_5890
mRNA
_5891
14255
14256
14257
14258
14259
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-1.1
N.D.
-4.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.8
N.D.
-5.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-1.7
N.D.
-3.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
-0.8
N.D.
-4.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-2.1
N.D.
-3.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.6
-0.8
N.D.
-4.9
auxotrophy
YNB Glucose
N.D.
+0.0
-0.8
N.D.
-4.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-1.6
N.D.
-3.6
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.3
N.D.
-4.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.7
N.D.
-3.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-1.1
N.D.
-2.9
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
-0.3
N.D.
-2.9
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
+0.3
N.D.
-3.6
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.3
N.D.
-2.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-1.0
N.D.
-1.8
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
-0.3
N.D.
-2.0
auxotrophy
Dropout Complete
N.D.
-0.1
-2.6
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.3
N.D.
-1.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
+0.0
N.D.
-0.7
growth on ypd
YPD
N.D.
-0.1
+1.0
N.D.
-1.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-1.7
N.D.
+2.3
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