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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14269 and 14270 are separated by 417 nucleotides
14270 and 14271 are separated by 568 nucleotides
14271 and 14272 are separated by 234 nucleotides
14272 and 14273 are separated by 202 nucleotides
mRNA_5901: 14269 - K07204 RAPTOR regulatory associated protein of mTOR, at 1,201,265 to 1,206,244
14269
mRNA_5902: 14270 - K08336 ATG12 ubiquitin-like protein ATG12, at 1,206,662 to 1,207,258
14270
mRNA_5903: 14271 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 1,207,827 to 1,210,876
14271
mRNA_5904: 14272 - KOG4234 TPR repeat-containing protein, at 1,211,111 to 1,212,389
14272
mRNA_5905: 14273 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 1,212,592 to 1,214,577
14273
Group
Condition
mRNA
_5901
mRNA
_5902
mRNA
_5903
mRNA
_5904
mRNA
_5905
14269
14270
14271
14272
14273
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-3.9
+0.0
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-2.0
+0.1
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-1.5
-0.1
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-1.5
+0.1
+0.2
+0.2
growth on ypd
YPD
N.D.
-0.5
-0.0
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
+0.1
-0.1
-0.4
growth on oleic acid
YNB Glucose
N.D.
-0.3
+0.0
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.1
-0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.8
+0.0
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.1
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.1
-0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.0
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.1
+0.1
+0.2
auxotrophy
Dropout Complete
N.D.
+0.1
-0.0
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
+0.1
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-0.0
+0.3
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.2
+0.1
-0.4
auxotrophy
YNB Glucose
N.D.
+0.1
+0.1
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.1
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.1
+0.5
+0.3
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