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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14271 and 14272 are separated by 234 nucleotides
14272 and 14273 are separated by 202 nucleotides
14273 and 14274 are separated by 345 nucleotides
14274 and 14275 are separated by 436 nucleotides
mRNA_5903: 14271 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 1,207,827 to 1,210,876
14271
mRNA_5904: 14272 - KOG4234 TPR repeat-containing protein, at 1,211,111 to 1,212,389
14272
mRNA_5905: 14273 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 1,212,592 to 1,214,577
14273
mRNA_5906: 14274 - KOG2568 Predicted membrane protein, at 1,214,923 to 1,217,024
14274
mRNA_5907: 14275 - K02726 PSMA2 20S proteasome subunit alpha 2, at 1,217,461 to 1,218,756
14275
Group
Condition
mRNA
_5903
mRNA
_5904
mRNA
_5905
mRNA
_5906
mRNA
_5907
14271
14272
14273
14274
14275
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
-0.4
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
-0.4
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
+0.1
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.1
-0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-0.4
-0.1
N.D.
growth on ypd
YPD
-0.0
-0.1
-0.3
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
+0.0
-0.0
N.D.
auxotrophy
Dropout Complete
-0.0
+0.2
-0.3
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.1
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
+0.2
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.3
-0.0
-0.1
N.D.
auxotrophy
YNB Glucose
+0.1
+0.0
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.2
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
+0.1
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
+0.3
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.3
+0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.2
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
+0.4
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.5
+0.3
-0.1
N.D.
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