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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14276 and 14277 are separated by 386 nucleotides
14277 and 14278 are separated by 695 nucleotides
14278 and 14279 are separated by 202 nucleotides
14279 and 14280 are separated by 546 nucleotides
mRNA_5908: 14276 - Hypothetical Protein, at 1,218,937 to 1,220,289
14276
mRNA_5909: 14277 - K00077 panE, apbA 2-dehydropantoate 2-reductase, at 1,220,676 to 1,222,238
14277
mRNA_5910: 14278 - K11094 SNRPB2 U2 small nuclear ribonucleoprotein B'', at 1,222,934 to 1,224,150
14278
mRNA_5911: 14279 - ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSitePatterns-EGF-like domain signature 2.-PS01186,ProSiteProfiles-EGF-like domain profile.-PS50026, at 1,224,353 to 1,227,750
14279
mRNA_5912: 14280 - K11375 ELP4 elongator complex protein 4, at 1,228,297 to 1,229,962
14280
Group
Condition
mRNA
_5908
mRNA
_5909
mRNA
_5910
mRNA
_5911
mRNA
_5912
14276
14277
14278
14279
14280
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
N.D.
-0.3
-2.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
N.D.
+0.3
-2.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
N.D.
-0.6
-1.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
-0.1
-1.8
auxotrophy
Dropout Complete
-0.1
N.D.
N.D.
-0.3
-1.3
growth on ypd
YPD
+0.0
N.D.
N.D.
-0.2
-1.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
N.D.
-0.1
-1.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
-0.1
-1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
N.D.
-0.1
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
N.D.
+0.3
-1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
N.D.
-0.1
-0.6
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
N.D.
+0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose
-0.1
N.D.
N.D.
-0.1
-0.4
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
N.D.
+0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
N.D.
+0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
N.D.
+0.1
-0.0
growth on oleic acid
YNB Glucose
-0.2
N.D.
N.D.
+0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
N.D.
+0.3
-0.0
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