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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14278 and 14279 are separated by 202 nucleotides
14279 and 14280 are separated by 546 nucleotides
14280 and 14281 are separated by 109 nucleotides
14281 and 14282 are separated by 497 nucleotides
mRNA_5910: 14278 - K11094 SNRPB2 U2 small nuclear ribonucleoprotein B'', at 1,222,934 to 1,224,150
14278
mRNA_5911: 14279 - ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSitePatterns-EGF-like domain signature 2.-PS01186,ProSiteProfiles-EGF-like domain profile.-PS50026, at 1,224,353 to 1,227,750
14279
mRNA_5912: 14280 - K11375 ELP4 elongator complex protein 4, at 1,228,297 to 1,229,962
14280
mRNA_5913: 14281 - K14455 GOT2 aspartate aminotransferase, mitochondrial, at 1,230,072 to 1,231,795
14281
mRNA_5914: 14282 - HMMPfam-Nuclear protein Es2-PF09751, at 1,232,293 to 1,234,588
14282
Group
Condition
mRNA
_5910
mRNA
_5911
mRNA
_5912
mRNA
_5913
mRNA
_5914
14278
14279
14280
14281
14282
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
-2.8
-0.3
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
+0.0
-2.1
-0.9
auxotrophy
Dropout Complete
N.D.
-0.3
-1.3
-0.1
-1.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.4
-0.5
-1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.6
-1.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.2
-0.3
-1.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-1.3
-0.3
-0.5
auxotrophy
YNB Glucose
N.D.
-0.1
-0.4
-0.4
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
-1.6
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
-2.2
+0.4
+0.7
growth on ypd
YPD
N.D.
-0.2
-1.4
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-1.8
-0.6
+1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-1.1
+0.5
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.8
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.5
-0.8
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-1.4
+0.1
+1.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.4
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
-0.0
-0.8
+0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.0
-0.0
+0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.0
-0.0
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-1.1
+0.4
+1.8
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