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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14279 and 14280 are separated by 546 nucleotides
14280 and 14281 are separated by 109 nucleotides
14281 and 14282 are separated by 497 nucleotides
14282 and 14283 are separated by 428 nucleotides
mRNA_5911: 14279 - ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSitePatterns-EGF-like domain signature 2.-PS01186,ProSiteProfiles-EGF-like domain profile.-PS50026, at 1,224,353 to 1,227,750
14279
mRNA_5912: 14280 - K11375 ELP4 elongator complex protein 4, at 1,228,297 to 1,229,962
14280
mRNA_5913: 14281 - K14455 GOT2 aspartate aminotransferase, mitochondrial, at 1,230,072 to 1,231,795
14281
mRNA_5914: 14282 - HMMPfam-Nuclear protein Es2-PF09751, at 1,232,293 to 1,234,588
14282
mRNA_5915: 14283 - HMMPfam-Tannase and feruloyl esterase-PF07519,SUPERFAMILY--SSF53474, at 1,235,017 to 1,236,924
14283
Group
Condition
mRNA
_5911
mRNA
_5912
mRNA
_5913
mRNA
_5914
mRNA
_5915
14279
14280
14281
14282
14283
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-2.8
-0.3
-0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.0
-2.1
-0.9
+0.0
auxotrophy
Dropout Complete
-0.3
-1.3
-0.1
-1.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-1.3
-0.3
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
-0.5
-1.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.6
-1.0
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-2.2
+0.4
+0.7
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
-0.3
-1.7
+0.3
auxotrophy
YNB Glucose
-0.1
-0.4
-0.4
-0.8
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-1.1
+0.5
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-1.8
-0.6
+1.3
+0.0
growth on ypd
YPD
-0.2
-1.4
-0.2
+0.5
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-1.6
+0.2
+0.4
+0.7
growth on ricinoleic acid
YNB Glucose
+0.1
-0.8
-0.2
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.5
-0.8
+0.3
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.4
-0.3
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-1.4
+0.1
+1.1
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.0
-0.8
+0.6
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
-0.0
+0.5
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
-0.0
+0.8
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-1.1
+0.4
+1.8
+0.2
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