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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14281 and 14282 are separated by 497 nucleotides
14282 and 14283 are separated by 428 nucleotides
14283 and 14284 are separated by 1003 nucleotides
14284 and 14285 are separated by 622 nucleotides
mRNA_5913: 14281 - K14455 GOT2 aspartate aminotransferase, mitochondrial, at 1,230,072 to 1,231,795
14281
mRNA_5914: 14282 - HMMPfam-Nuclear protein Es2-PF09751, at 1,232,293 to 1,234,588
14282
mRNA_5915: 14283 - HMMPfam-Tannase and feruloyl esterase-PF07519,SUPERFAMILY--SSF53474, at 1,235,017 to 1,236,924
14283
mRNA_5916: 14284 - Hypothetical Protein, at 1,237,928 to 1,238,672
14284
mRNA_5917: 14285 - Hypothetical Protein, at 1,239,295 to 1,239,997
14285
Group
Condition
mRNA
_5913
mRNA
_5914
mRNA
_5915
mRNA
_5916
mRNA
_5917
14281
14282
14283
14284
14285
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.1
-0.9
+0.0
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-1.7
+0.3
-0.0
-0.7
auxotrophy
YNB Glucose
-0.4
-0.8
+0.2
+0.2
-1.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.5
-0.1
+0.3
-1.3
auxotrophy
Dropout Complete
-0.1
-1.1
+0.3
-0.3
-0.6
growth on oleic acid
YNB Glucose
-0.3
-0.2
-0.0
+0.4
-1.6
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-1.2
+0.3
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.5
-0.1
+0.2
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
-0.2
+0.3
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.8
+0.3
+0.1
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.3
-0.2
-0.1
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+1.3
+0.0
+0.3
-2.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+0.6
-0.0
+0.0
-0.6
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
+0.2
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.5
+0.3
+0.1
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.8
+0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.7
-0.2
+0.4
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+1.1
+0.5
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+1.8
+0.2
-0.0
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.4
+0.7
+0.9
+0.9
growth on ypd
YPD
-0.2
+0.5
+0.3
+0.0
+2.4
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