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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14283 and 14284 are separated by 1003 nucleotides
14284 and 14285 are separated by 622 nucleotides
14285 and 14286 are separated by 1222 nucleotides
14286 and 14287 are separated by 585 nucleotides
mRNA_5915: 14283 - HMMPfam-Tannase and feruloyl esterase-PF07519,SUPERFAMILY--SSF53474, at 1,235,017 to 1,236,924
14283
mRNA_5916: 14284 - Hypothetical Protein, at 1,237,928 to 1,238,672
14284
mRNA_5917: 14285 - Hypothetical Protein, at 1,239,295 to 1,239,997
14285
mRNA_5918: 14286 - K11498 CENPE centromeric protein E, at 1,241,220 to 1,242,760
14286
mRNA_5919: 14287 - KOG1836 Extracellular matrix glycoprotein Laminin subunits alpha and gamma, at 1,243,346 to 1,244,488
14287
Group
Condition
mRNA
_5915
mRNA
_5916
mRNA
_5917
mRNA
_5918
mRNA
_5919
14283
14284
14285
14286
14287
growth on oleic acid
YNB Glucose
-0.0
+0.4
-1.6
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.3
-2.0
+0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
-0.6
-0.4
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
-1.3
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.5
-0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.6
-0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
-0.1
-0.4
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
-0.9
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.0
+0.2
-0.4
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.1
-0.2
-0.3
-0.3
auxotrophy
YNB Glucose
+0.2
+0.2
-1.4
+0.7
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.7
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.4
-0.4
-0.0
+0.1
auxotrophy
Dropout Complete
+0.3
-0.3
-0.6
+0.7
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
-0.7
+1.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.3
-0.2
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
-0.0
+0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
-0.1
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.0
-0.8
+1.3
+0.3
growth on ypd
YPD
+0.3
+0.0
+2.4
-1.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.9
+0.9
+1.9
+0.2
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