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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14284 and 14285 are separated by 622 nucleotides
14285 and 14286 are separated by 1222 nucleotides
14286 and 14287 are separated by 585 nucleotides
14287 and 14288 are separated by 546 nucleotides
mRNA_5916: 14284 - Hypothetical Protein, at 1,237,928 to 1,238,672
14284
mRNA_5917: 14285 - Hypothetical Protein, at 1,239,295 to 1,239,997
14285
mRNA_5918: 14286 - K11498 CENPE centromeric protein E, at 1,241,220 to 1,242,760
14286
mRNA_5919: 14287 - KOG1836 Extracellular matrix glycoprotein Laminin subunits alpha and gamma, at 1,243,346 to 1,244,488
14287
mRNA_5920: 14288 - K03022 RPC8, POLR3H DNA-directed RNA polymerase III subunit RPC8, at 1,245,035 to 1,246,181
14288
Group
Condition
mRNA
_5916
mRNA
_5917
mRNA
_5918
mRNA
_5919
mRNA
_5920
14284
14285
14286
14287
14288
growth on oleic acid
YNB Glucose
+0.4
-1.6
-0.5
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-2.0
+0.1
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.6
-0.4
-0.6
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.5
-0.1
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-1.3
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-0.4
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.6
-0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
-0.3
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.2
-0.4
-0.4
N.D.
auxotrophy
YNB Glucose
+0.2
-1.4
+0.7
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.9
+0.3
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.7
+0.3
-0.1
N.D.
auxotrophy
Dropout Complete
-0.3
-0.6
+0.7
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.5
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.7
+1.0
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
+0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.4
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.4
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.8
+1.3
+0.3
N.D.
growth on ypd
YPD
+0.0
+2.4
-1.2
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
+0.9
+1.9
+0.2
N.D.
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