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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14288 and 14289 are separated by 327 nucleotides
14289 and 14290 are separated by 361 nucleotides
14290 and 14291 are separated by 228 nucleotides
14291 and 14292 are separated by 407 nucleotides
mRNA_5920: 14288 - K03022 RPC8, POLR3H DNA-directed RNA polymerase III subunit RPC8, at 1,245,035 to 1,246,181
14288
mRNA_5921: 14289 - K14789 NOP6 nucleolar protein 6, at 1,246,509 to 1,247,671
14289
mRNA_5922: 14290 - KOG2615 Permease of the major facilitator superfamily, at 1,248,033 to 1,250,292
14290
mRNA_5923: 14291 - Hypothetical Protein, at 1,250,521 to 1,252,359
14291
mRNA_5924: 14292 - Hypothetical Protein, at 1,252,767 to 1,253,649
14292
Group
Condition
mRNA
_5920
mRNA
_5921
mRNA
_5922
mRNA
_5923
mRNA
_5924
14288
14289
14290
14291
14292
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.5
-0.4
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.0
-0.2
-0.3
N.D.
auxotrophy
YNB Glucose
N.D.
-0.9
-0.4
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
-0.5
-0.2
N.D.
auxotrophy
Dropout Complete
N.D.
-0.6
-0.4
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.6
-0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.5
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
+0.0
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
-0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.5
+0.2
-0.0
N.D.
growth on ypd
YPD
N.D.
-0.1
-0.1
-0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.4
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.5
-0.4
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
-0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.3
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+1.4
-0.1
+0.3
N.D.
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