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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14294 and 14295 are separated by 124 nucleotides
14295 and 14296 are separated by 645 nucleotides
14296 and 14297 are separated by 266 nucleotides
14297 and 14298 are separated by 1587 nucleotides
mRNA_5926: 14294 - K02989 RP-S5e, RPS5 small subunit ribosomal protein S5e, at 1,255,116 to 1,256,595
14294
mRNA_5927: 14295 - K02979 RP-S28e, RPS28 small subunit ribosomal protein S28e, at 1,256,720 to 1,257,399
14295
mRNA_5928: 14296 - KOG3472 Predicted small membrane protein, at 1,258,045 to 1,258,837
14296
mRNA_5929: 14297 - Hypothetical Protein, at 1,259,104 to 1,259,543
14297
mRNA_5930: 14298 - Hypothetical Protein, at 1,261,131 to 1,261,763
14298
Group
Condition
mRNA
_5926
mRNA
_5927
mRNA
_5928
mRNA
_5929
mRNA
_5930
14294
14295
14296
14297
14298
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-2.3
-1.8
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.5
-0.5
-0.6
growth on ypd
YPD
N.D.
N.D.
+0.0
-0.9
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.3
-0.7
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
-0.1
-0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.5
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.0
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.3
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.5
-0.3
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.7
-0.0
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
-0.3
+0.6
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.3
+0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
+0.5
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.4
+0.2
+1.2
auxotrophy
YNB Glucose
N.D.
N.D.
+0.0
+0.5
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.5
+0.5
+1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.5
+0.6
+1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
+1.4
+1.3
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