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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14298 and 14299 are separated by 146 nucleotides
14299 and 14300 are separated by 851 nucleotides
14300 and 14301 are separated by 1103 nucleotides
14301 and 14302 are separated by 213 nucleotides
mRNA_5930: 14298 - Hypothetical Protein, at 1,261,131 to 1,261,763
14298
mRNA_5931: 14299 - SUPERFAMILY--SSF51695, at 1,261,910 to 1,263,239
14299
mRNA_5932: 14300 - Hypothetical Protein, at 1,264,091 to 1,265,765
14300
mRNA_5933: 14301 - SUPERFAMILY--SSF51126, at 1,266,869 to 1,268,786
14301
mRNA_5934: 14302 - HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506, at 1,269,000 to 1,270,285
14302
Group
Condition
mRNA
_5930
mRNA
_5931
mRNA
_5932
mRNA
_5933
mRNA
_5934
14298
14299
14300
14301
14302
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.2
+0.4
-0.4
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
+0.3
-0.2
-1.0
growth on ypd
YPD
-0.2
-0.2
+0.7
-0.2
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
+0.2
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
+0.4
-0.1
+0.6
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.2
+0.2
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.4
-0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.6
-0.0
-0.1
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.2
+0.1
-0.0
-0.3
growth on ricinoleic acid
YNB Glucose
+0.0
+0.4
+0.0
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.4
+0.2
+0.2
-0.0
growth on oleic acid
YNB Glucose
+0.1
-0.2
+0.3
+0.1
+0.6
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
+0.3
-0.1
+0.6
auxotrophy
Dropout Complete
+0.3
+0.1
-0.4
+0.2
+0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
+0.0
+0.3
+0.8
auxotrophy
YNB Glucose
+0.7
-0.1
-0.1
+0.3
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.3
+0.1
+0.4
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.3
+0.3
+0.3
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.2
+0.2
-0.2
+0.2
+1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.3
+0.1
+0.3
-0.1
+1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
+0.1
-0.3
+0.3
+2.1
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mRNA_5930
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mRNA_5931
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mRNA_5932
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mRNA_5934
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