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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14300 and 14301 are separated by 1103 nucleotides
14301 and 14302 are separated by 213 nucleotides
14302 and 14303 are separated by 334 nucleotides
14303 and 14304 are separated by 450 nucleotides
mRNA_5932: 14300 - Hypothetical Protein, at 1,264,091 to 1,265,765
14300
mRNA_5933: 14301 - SUPERFAMILY--SSF51126, at 1,266,869 to 1,268,786
14301
mRNA_5934: 14302 - HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506, at 1,269,000 to 1,270,285
14302
mRNA_5935: 14303 - HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689, at 1,270,620 to 1,271,852
14303
mRNA_5936: 14304 - HMMPfam-Homeobox domain-PF00046,HMMPfam-Predicted membrane protein (DUF2231)-PF09990,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,272,303 to 1,276,279
14304
Group
Condition
mRNA
_5932
mRNA
_5933
mRNA
_5934
mRNA
_5935
mRNA
_5936
14300
14301
14302
14303
14304
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
-1.0
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.4
-1.3
+0.7
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
-0.6
-0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.6
+0.1
-1.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.2
+0.4
-0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
-0.3
+0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
-0.0
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
+0.2
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
+0.6
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
+0.5
-0.5
-0.0
auxotrophy
YNB Glucose
-0.1
+0.3
+0.7
-0.4
+0.1
growth on oleic acid
YNB Glucose
+0.3
+0.1
+0.6
-0.3
+0.0
growth on ypd
YPD
+0.7
-0.2
-0.7
+1.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
+0.3
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
-0.3
+1.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
+0.8
-0.1
-0.0
auxotrophy
Dropout Complete
-0.4
+0.2
+0.8
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
+1.2
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
+0.1
+0.9
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
+1.3
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.3
+2.1
-0.2
+0.1
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mRNA_5933
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mRNA_5934
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