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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14301 and 14302 are separated by 213 nucleotides
14302 and 14303 are separated by 334 nucleotides
14303 and 14304 are separated by 450 nucleotides
14304 and 14305 are separated by 395 nucleotides
mRNA_5933: 14301 - SUPERFAMILY--SSF51126, at 1,266,869 to 1,268,786
14301
mRNA_5934: 14302 - HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506, at 1,269,000 to 1,270,285
14302
mRNA_5935: 14303 - HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689, at 1,270,620 to 1,271,852
14303
mRNA_5936: 14304 - HMMPfam-Homeobox domain-PF00046,HMMPfam-Predicted membrane protein (DUF2231)-PF09990,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,272,303 to 1,276,279
14304
mRNA_5937: 14305 - Hypothetical Protein, at 1,276,675 to 1,277,757
14305
Group
Condition
mRNA
_5933
mRNA
_5934
mRNA
_5935
mRNA
_5936
mRNA
_5937
14301
14302
14303
14304
14305
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-1.3
+0.7
-0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-1.0
+0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.6
-0.0
+0.2
+0.0
growth on ypd
YPD
-0.2
-0.7
+1.2
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.5
-0.5
-0.0
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.1
-1.0
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.0
-0.1
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
-0.4
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.2
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.6
-0.4
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
+0.4
+0.2
+0.2
auxotrophy
YNB Glucose
+0.3
+0.7
-0.4
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.6
-0.3
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.8
-0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
-0.1
+0.2
+0.6
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.9
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.3
+1.0
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+1.2
-0.1
-0.0
+0.5
auxotrophy
Dropout Complete
+0.2
+0.8
+0.5
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+2.1
-0.2
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+1.3
+0.0
+0.3
+0.4
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mRNA_5934
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mRNA_5935
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