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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14303 and 14304 are separated by 450 nucleotides
14304 and 14305 are separated by 395 nucleotides
14305 and 14306 are separated by 974 nucleotides
14306 and 14307 are separated by 101 nucleotides
mRNA_5935: 14303 - HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689, at 1,270,620 to 1,271,852
14303
mRNA_5936: 14304 - HMMPfam-Homeobox domain-PF00046,HMMPfam-Predicted membrane protein (DUF2231)-PF09990,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,272,303 to 1,276,279
14304
mRNA_5937: 14305 - Hypothetical Protein, at 1,276,675 to 1,277,757
14305
mRNA_5938: 14306 - Hypothetical Protein, at 1,278,732 to 1,279,189
14306
mRNA_5939: 14307 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 1,279,291 to 1,281,884
14307
Group
Condition
mRNA
_5935
mRNA
_5936
mRNA
_5937
mRNA
_5938
mRNA
_5939
14303
14304
14305
14306
14307
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+0.2
+0.2
-0.7
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.2
-0.6
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.0
-0.4
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.1
+0.2
-0.0
-0.0
auxotrophy
YNB Glucose
-0.4
+0.1
-0.1
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.0
-0.2
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.4
+0.0
+0.1
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
+0.5
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
+0.0
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
-0.1
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.0
-0.4
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.3
+0.4
-0.6
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
+0.6
-0.2
-0.0
growth on oleic acid
YNB Glucose
-0.3
+0.0
+0.1
+0.5
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.2
+0.2
-0.1
+0.0
auxotrophy
Dropout Complete
+0.5
+0.1
+0.0
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.2
+0.0
+0.7
-0.0
growth on ypd
YPD
+1.2
-0.1
-0.2
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+0.9
+0.3
-0.2
+0.6
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
+0.2
+0.4
+0.5
+0.2
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mRNA_5937
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