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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14308 and 14309 are separated by 305 nucleotides
14309 and 14310 are separated by 488 nucleotides
14310 and 14311 are separated by 301 nucleotides
14311 and 14312 are separated by 187 nucleotides
mRNA_5940: 14308 - KOG3975 Uncharacterized conserved protein, at 1,282,291 to 1,283,820
14308
mRNA_5941: 14309 - K14676 NTE, NRE lysophospholipid hydrolase, at 1,284,126 to 1,289,660
14309
mRNA_5942: 14310 - HMMPfam-BUD22-PF09073, at 1,290,149 to 1,292,064
14310
mRNA_5943: 14311 - Hypothetical Protein, at 1,292,366 to 1,293,493
14311
mRNA_5944: 14312 - Hypothetical Protein, at 1,293,681 to 1,295,115
14312
Group
Condition
mRNA
_5940
mRNA
_5941
mRNA
_5942
mRNA
_5943
mRNA
_5944
14308
14309
14310
14311
14312
auxotrophy
Dropout Complete
-0.1
-0.2
N.D.
-0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
N.D.
-0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.6
N.D.
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
N.D.
-0.2
-0.1
growth on oleic acid
YNB Glucose
-0.4
+0.3
N.D.
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
N.D.
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.1
N.D.
+0.0
-0.2
growth on ypd
YPD
+0.3
-0.4
N.D.
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
N.D.
+0.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.5
N.D.
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose
+0.0
-0.1
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.4
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.0
N.D.
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
N.D.
+0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.0
N.D.
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
N.D.
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
+0.2
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
N.D.
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
N.D.
+0.4
+0.3
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