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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14309 and 14310 are separated by 488 nucleotides
14310 and 14311 are separated by 301 nucleotides
14311 and 14312 are separated by 187 nucleotides
14312 and 14313 are separated by 186 nucleotides
mRNA_5941: 14309 - K14676 NTE, NRE lysophospholipid hydrolase, at 1,284,126 to 1,289,660
14309
mRNA_5942: 14310 - HMMPfam-BUD22-PF09073, at 1,290,149 to 1,292,064
14310
mRNA_5943: 14311 - Hypothetical Protein, at 1,292,366 to 1,293,493
14311
mRNA_5944: 14312 - Hypothetical Protein, at 1,293,681 to 1,295,115
14312
mRNA_5945: 14313 - Hypothetical Protein, at 1,295,302 to 1,296,454
14313
Group
Condition
mRNA
_5941
mRNA
_5942
mRNA
_5943
mRNA
_5944
mRNA
_5945
14309
14310
14311
14312
14313
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
N.D.
+0.1
+0.2
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.2
-0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
-0.0
-0.2
+0.3
growth on ypd
YPD
-0.4
N.D.
+0.1
+0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.1
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.1
+0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.0
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.4
+0.1
+0.1
auxotrophy
Dropout Complete
-0.2
N.D.
-0.4
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.0
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
+0.1
-0.2
-0.2
growth on oleic acid
YNB Glucose
+0.3
N.D.
-0.0
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.1
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
+0.2
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
+0.3
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
+0.1
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
+0.1
+0.5
+0.1
auxotrophy
YNB Glucose
-0.1
N.D.
+0.1
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
+0.4
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.3
+0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.2
+1.0
+0.6
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