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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14311 and 14312 are separated by 187 nucleotides
14312 and 14313 are separated by 186 nucleotides
14313 and 14314 are separated by 295 nucleotides
14314 and 14315 are separated by 139 nucleotides
mRNA_5943: 14311 - Hypothetical Protein, at 1,292,366 to 1,293,493
14311
mRNA_5944: 14312 - Hypothetical Protein, at 1,293,681 to 1,295,115
14312
mRNA_5945: 14313 - Hypothetical Protein, at 1,295,302 to 1,296,454
14313
mRNA_5946: 14314 - Hypothetical Protein, at 1,296,750 to 1,297,889
14314
mRNA_5947: 14315 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 1,298,029 to 1,303,055
14315
Group
Condition
mRNA
_5943
mRNA
_5944
mRNA
_5945
mRNA
_5946
mRNA
_5947
14311
14312
14313
14314
14315
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.6
+0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
+0.0
+0.2
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.2
+0.3
-0.0
-0.9
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.5
-0.2
-0.3
growth on oleic acid
YNB Glucose
-0.0
+0.2
-0.3
+0.0
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.3
-0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
-0.7
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.2
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
-0.2
-0.0
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
-0.3
+0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.1
+0.1
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
+0.0
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.3
+0.1
-0.0
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.2
-0.1
-0.1
-0.1
auxotrophy
Dropout Complete
-0.4
+0.2
+0.2
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
+0.3
+0.1
-0.1
growth on ypd
YPD
+0.1
+0.3
-0.4
+0.1
+0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.5
+0.1
-0.0
+0.1
auxotrophy
YNB Glucose
+0.1
+0.2
+0.4
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.3
+0.2
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+1.0
+0.6
+0.1
-0.8
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