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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14313 and 14314 are separated by 295 nucleotides
14314 and 14315 are separated by 139 nucleotides
14315 and 14316 are separated by 476 nucleotides
14316 and 14317 are separated by 869 nucleotides
mRNA_5945: 14313 - Hypothetical Protein, at 1,295,302 to 1,296,454
14313
mRNA_5946: 14314 - Hypothetical Protein, at 1,296,750 to 1,297,889
14314
mRNA_5947: 14315 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 1,298,029 to 1,303,055
14315
mRNA_5948: 14316 - HMMPfam-Zinc finger C-x8-C-x5-C-x3-H type-PF14608,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356, at 1,303,532 to 1,306,602
14316
mRNA_5949: 14317 - K01046 E3.1.1.3 triacylglycerol lipase, at 1,307,472 to 1,308,620
14317
Group
Condition
mRNA
_5945
mRNA
_5946
mRNA
_5947
mRNA
_5948
mRNA
_5949
14313
14314
14315
14316
14317
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.0
-0.2
-0.9
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.1
-0.8
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.0
-0.4
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
-0.4
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.5
-0.2
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
-0.1
-0.4
N.D.
growth on oleic acid
YNB Glucose
-0.3
+0.0
-0.7
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
-1.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
-0.6
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.0
-0.9
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
+0.3
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
+0.1
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.3
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.2
+0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
-0.1
-0.2
N.D.
auxotrophy
YNB Glucose
+0.4
+0.0
+0.2
-0.3
N.D.
auxotrophy
Dropout Complete
+0.2
-0.0
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.1
-0.8
+0.7
N.D.
growth on ypd
YPD
-0.4
+0.1
+0.8
+0.7
N.D.
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